1 00:00:00,260 --> 00:00:12,510 [Music] 2 00:00:16,330 --> 00:00:14,109 hi everyone 3 00:00:18,730 --> 00:00:16,340 yeah so I'm a postdoc in Jack's lab and 4 00:00:21,040 --> 00:00:18,740 one of the overall I'd say like the main 5 00:00:22,960 --> 00:00:21,050 overall goal of Jack's lab the 6 00:00:25,660 --> 00:00:22,970 overarching theme and we all want to 7 00:00:27,580 --> 00:00:25,670 happen is to build a minimal cell and 8 00:00:29,470 --> 00:00:27,590 that's what we call a protocell that's 9 00:00:31,810 --> 00:00:29,480 capable of growth division of 10 00:00:34,389 --> 00:00:31,820 replication and eventually selection and 11 00:00:36,040 --> 00:00:34,399 evolution and so most of the people in 12 00:00:37,299 --> 00:00:36,050 the lab actually organic chemists and 13 00:00:39,220 --> 00:00:37,309 they're very talented and they're trying 14 00:00:41,079 --> 00:00:39,230 to get the middle of that diagram 15 00:00:43,540 --> 00:00:41,089 they're happening so like genetic 16 00:00:46,360 --> 00:00:43,550 material and information replicating 17 00:00:48,279 --> 00:00:46,370 without the help help of enzymes but the 18 00:00:49,889 --> 00:00:48,289 other aspect is actually packaging this 19 00:00:52,479 --> 00:00:49,899 all up and Marcus gave a very nice 20 00:00:54,759 --> 00:00:52,489 introduction earlier of putting it all 21 00:00:57,549 --> 00:00:54,769 inside a compartment to resemble x' like 22 00:00:58,419 --> 00:00:57,559 life as we know it cellular life and so 23 00:01:01,419 --> 00:00:58,429 that's where I come in 24 00:01:03,910 --> 00:01:01,429 I worked on the membranes and I just 25 00:01:06,390 --> 00:01:03,920 like to add that in addition to having a 26 00:01:09,270 --> 00:01:06,400 compartment to sort of condense and 27 00:01:11,560 --> 00:01:09,280 compartmentalize important things like 28 00:01:13,780 --> 00:01:11,570 molecules that might want to react with 29 00:01:15,760 --> 00:01:13,790 each other it's also used to have useful 30 00:01:19,090 --> 00:01:15,770 to have a compartment to keep away 31 00:01:20,920 --> 00:01:19,100 things like parasites are safe you're an 32 00:01:24,670 --> 00:01:20,930 RNA molecule that's evolved the ability 33 00:01:26,440 --> 00:01:24,680 to replicate other RNA molecules you 34 00:01:28,270 --> 00:01:26,450 want to maximize your Fitness by only 35 00:01:30,730 --> 00:01:28,280 replicating yourself and so having that 36 00:01:32,500 --> 00:01:30,740 membrane there stops parasites from 37 00:01:34,900 --> 00:01:32,510 coming in and are compromising your 38 00:01:37,270 --> 00:01:34,910 fitness and also having a selectively 39 00:01:39,880 --> 00:01:37,280 permeable barrier is nice because you 40 00:01:41,800 --> 00:01:39,890 want to be able to you know flirt around 41 00:01:44,530 --> 00:01:41,810 and your pond or whatever and take up 42 00:01:49,510 --> 00:01:44,540 nutrients but also not just take up 43 00:01:53,140 --> 00:01:49,520 anything great so this picture appeared 44 00:01:56,800 --> 00:01:53,150 earlier so basically life as we know it 45 00:01:59,800 --> 00:01:56,810 is cellular life and most organisms have 46 00:02:01,870 --> 00:01:59,810 cells that are comprised mostly of 47 00:02:04,080 --> 00:02:01,880 phospholipids so these are and 48 00:02:06,160 --> 00:02:04,090 fulfilling molecules that consists of a 49 00:02:08,499 --> 00:02:06,170 hydrophilic head group so have some 50 00:02:10,690 --> 00:02:08,509 charges there that's just a picture and 51 00:02:13,479 --> 00:02:10,700 then you see the two tails that are 52 00:02:15,760 --> 00:02:13,489 going out a very fatty chains and these 53 00:02:19,559 --> 00:02:15,770 things actually don't like being in 54 00:02:21,239 --> 00:02:19,569 water and their fatty acids and so what 55 00:02:22,709 --> 00:02:21,249 happens when you throw this in water is 56 00:02:25,289 --> 00:02:22,719 that these molecules spontaneously 57 00:02:26,910 --> 00:02:25,299 assemble into a bilayer and this 58 00:02:29,099 --> 00:02:26,920 maximizes the entropy of the system 59 00:02:30,929 --> 00:02:29,109 because the water molecules that would 60 00:02:33,690 --> 00:02:30,939 otherwise have to awkwardly crowd around 61 00:02:36,119 --> 00:02:33,700 the fatty acid tails become liberated to 62 00:02:37,830 --> 00:02:36,129 explore space when all the fatty acid 63 00:02:40,050 --> 00:02:37,840 tails are actually nestled with each 64 00:02:41,970 --> 00:02:40,060 other and so this is cool it's a 65 00:02:44,250 --> 00:02:41,980 spontaneous process you can buy like 66 00:02:45,750 --> 00:02:44,260 phospholipids from it's kind of 67 00:02:46,920 --> 00:02:45,760 expensive so maybe your live combines 68 00:02:49,020 --> 00:02:46,930 with phospholipids and then you 69 00:02:52,619 --> 00:02:49,030 basically like throw it into water and 70 00:02:55,379 --> 00:02:52,629 you see membranous structures form 71 00:02:57,119 --> 00:02:55,389 luckily for us there are much simpler 72 00:03:00,270 --> 00:02:57,129 molecules that can also self assemble 73 00:03:03,420 --> 00:03:00,280 into membranes if you want to make 74 00:03:05,670 --> 00:03:03,430 phospholipids and a prebiotic a possible 75 00:03:07,860 --> 00:03:05,680 manner you can give chemists it's a lot 76 00:03:11,670 --> 00:03:07,870 of headaches I think but fatty acids are 77 00:03:13,470 --> 00:03:11,680 basically soaps and what happens when we 78 00:03:16,800 --> 00:03:13,480 use the most soap is that we're using 79 00:03:18,479 --> 00:03:16,810 that quite quite a high pH although the 80 00:03:19,920 --> 00:03:18,489 carboxylic acid head groups are 81 00:03:21,929 --> 00:03:19,930 deprotonated so there's a lot of 82 00:03:23,789 --> 00:03:21,939 negative charge and those charges repel 83 00:03:25,830 --> 00:03:23,799 each other and they want to take up alot 84 00:03:28,110 --> 00:03:25,840 of space and they form these really sort 85 00:03:30,629 --> 00:03:28,120 of high curvature structures that we 86 00:03:33,869 --> 00:03:30,639 referred to as micelles and that's what 87 00:03:36,119 --> 00:03:33,879 we used a soap every day when you buy 88 00:03:38,909 --> 00:03:36,129 these from a company they actually come 89 00:03:41,129 --> 00:03:38,919 as a neat oil so if you drop the pH way 90 00:03:43,439 --> 00:03:41,139 down so that all of the carboxylic acid 91 00:03:45,030 --> 00:03:43,449 head groups actually protonated then all 92 00:03:46,649 --> 00:03:45,040 the negative charges are gone nothing's 93 00:03:49,229 --> 00:03:46,659 repelling anything and actually sit 94 00:03:51,659 --> 00:03:49,239 around as neat oil and you can I pet it 95 00:03:53,520 --> 00:03:51,669 it's a little bit viscous but you know 96 00:03:55,439 --> 00:03:53,530 pretty much oil and then the magic 97 00:03:57,839 --> 00:03:55,449 happens at this sort of like a middle pH 98 00:03:59,819 --> 00:03:57,849 the Goldilocks sort of pH and you have 99 00:04:01,530 --> 00:03:59,829 some head groups that are deprotonated 100 00:04:03,449 --> 00:04:01,540 and some that are protonated and these 101 00:04:07,349 --> 00:04:03,459 things can actually hydrogen bond and 102 00:04:10,110 --> 00:04:07,359 almost make this sort of two-tailed sort 103 00:04:12,360 --> 00:04:10,120 of fake phospholipid looking structure 104 00:04:13,649 --> 00:04:12,370 like I showed you before but there are 105 00:04:15,360 --> 00:04:13,659 no real bonds it's I mean the no 106 00:04:18,749 --> 00:04:15,370 covalent bonds they just sort of paired 107 00:04:21,060 --> 00:04:18,759 up weakly and um you can form Philo's 108 00:04:22,770 --> 00:04:21,070 just cool and the reason why were quite 109 00:04:24,749 --> 00:04:22,780 interested in this other than fatty 110 00:04:27,390 --> 00:04:24,759 acids being relatively cheap because we 111 00:04:29,550 --> 00:04:27,400 use it as soap is that they're they're 112 00:04:31,740 --> 00:04:29,560 quite our prebiotic lee plausible roots 113 00:04:33,330 --> 00:04:31,750 just synthesizing fatty acids and if you 114 00:04:35,790 --> 00:04:33,340 look at the organic material 115 00:04:38,040 --> 00:04:35,800 on carbonaceous chondrites fatty acids 116 00:04:41,520 --> 00:04:38,050 actually comprised I think the largest 117 00:04:44,570 --> 00:04:41,530 sort of fractional that most most well a 118 00:04:47,370 --> 00:04:44,580 lot of the molecules of fatty acids 119 00:04:49,020 --> 00:04:47,380 great so then like I said earlier you 120 00:04:50,550 --> 00:04:49,030 can throw them into water and they will 121 00:04:53,250 --> 00:04:50,560 just spontaneously assemble into 122 00:04:55,320 --> 00:04:53,260 membranes and what it might look like on 123 00:04:57,510 --> 00:04:55,330 the is what I'm showing on the left here 124 00:04:59,879 --> 00:04:57,520 and we have some structures that are 125 00:05:01,920 --> 00:04:59,889 quite dark and visible and these are 126 00:05:04,320 --> 00:05:01,930 multilamellar vesicles that means they 127 00:05:05,940 --> 00:05:04,330 have lots and lots of membrane layers 128 00:05:07,770 --> 00:05:05,950 kind of stacked up like an onion ring 129 00:05:11,520 --> 00:05:07,780 and they're pretty easy to see under a 130 00:05:13,590 --> 00:05:11,530 microscope you can also get vesicles 131 00:05:16,350 --> 00:05:13,600 that just have one sort of cell membrane 132 00:05:19,200 --> 00:05:16,360 or not cell 1 membrane and we refer to 133 00:05:21,240 --> 00:05:19,210 these as uni lamella vesicle ok 134 00:05:23,159 --> 00:05:21,250 you also get things to a tubular and 135 00:05:26,129 --> 00:05:23,169 there are things for the spherical and 136 00:05:28,950 --> 00:05:26,139 all sorts of things it's quite a zoo and 137 00:05:31,080 --> 00:05:28,960 we can also die the membranes red in 138 00:05:32,760 --> 00:05:31,090 this case and then stop some RNA inside 139 00:05:35,670 --> 00:05:32,770 and the RNA doesn't leak out the RNA 140 00:05:37,620 --> 00:05:35,680 screen and this is cool people in lab 141 00:05:39,930 --> 00:05:37,630 and other labs have done all sorts of 142 00:05:44,670 --> 00:05:39,940 really good experiments using this 143 00:05:46,290 --> 00:05:44,680 system but basically uh I'm a physicist 144 00:05:48,240 --> 00:05:46,300 by training so when I look at this I 145 00:05:51,210 --> 00:05:48,250 just think it's too messy 146 00:05:52,770 --> 00:05:51,220 this is what cells look like they just 147 00:05:54,960 --> 00:05:52,780 have that one membrane on the outside 148 00:05:58,350 --> 00:05:54,970 usually quite well separated from any 149 00:06:03,240 --> 00:05:58,360 other membranes and one way of referring 150 00:06:06,270 --> 00:06:03,250 to this sort of membrane topology is as 151 00:06:08,040 --> 00:06:06,280 a giant uni lamellar vesicle so then the 152 00:06:09,170 --> 00:06:08,050 giant thing refers to than being so big 153 00:06:11,520 --> 00:06:09,180 that you can see them under a microscope 154 00:06:13,800 --> 00:06:11,530 the Uni lamella because there's just 155 00:06:16,110 --> 00:06:13,810 that one membrane and I'm calling this 156 00:06:17,969 --> 00:06:16,120 yeast cell a vesicle because I look on 157 00:06:19,740 --> 00:06:17,979 vesicles but um that's essentially what 158 00:06:23,190 --> 00:06:19,750 they are they're just a fluid sac that's 159 00:06:24,390 --> 00:06:23,200 sitting around um that makes beer and 160 00:06:28,500 --> 00:06:24,400 stuff anyway 161 00:06:31,020 --> 00:06:28,510 pretty useful so what is kind of crazy 162 00:06:33,779 --> 00:06:31,030 is that this is kind of maybe one of the 163 00:06:36,089 --> 00:06:33,789 sort of really big challenges and 164 00:06:38,490 --> 00:06:36,099 synthetic followed biology we want to be 165 00:06:40,560 --> 00:06:38,500 able to make these giant uni lamella 166 00:06:43,050 --> 00:06:40,570 vesicles to mimic cells to be able to 167 00:06:44,880 --> 00:06:43,060 try out synthetic biology systems even 168 00:06:47,309 --> 00:06:44,890 to use them for drug delivery so that 169 00:06:49,170 --> 00:06:47,319 when they fuse with a cell membrane you 170 00:06:51,809 --> 00:06:49,180 have other extra little bits floating 171 00:06:54,359 --> 00:06:51,819 around and in order to be able to make 172 00:06:56,579 --> 00:06:54,369 these single uni lamellar membranes 173 00:06:58,230 --> 00:06:56,589 people have employed all sorts of 174 00:07:00,239 --> 00:06:58,240 different microfluidic techniques so you 175 00:07:03,179 --> 00:07:00,249 need a lot of sort of cleanroom 176 00:07:04,619 --> 00:07:03,189 experience and a lot of I don't know it 177 00:07:06,869 --> 00:07:04,629 can get quite frustrating but basically 178 00:07:09,089 --> 00:07:06,879 it's a technological challenge to make 179 00:07:12,089 --> 00:07:09,099 membranes that are you Neela Mela and 180 00:07:13,920 --> 00:07:12,099 this is nice because at some point I 181 00:07:16,290 --> 00:07:13,930 guess it's easy for cells now because 182 00:07:19,309 --> 00:07:16,300 cells beget cells but at some point if 183 00:07:23,279 --> 00:07:19,319 you rewind these unity lamellar single 184 00:07:25,019 --> 00:07:23,289 membrane forms became favored and so 185 00:07:26,399 --> 00:07:25,029 these primitive cells just did it like 186 00:07:29,909 --> 00:07:26,409 they didn't have micro fluidics or 187 00:07:32,100 --> 00:07:29,919 anything and so the thing I wanted to 188 00:07:34,439 --> 00:07:32,110 kind of understand was how did this sort 189 00:07:38,189 --> 00:07:34,449 of well separated or uni lamellar 190 00:07:40,439 --> 00:07:38,199 structure form become favored and then 191 00:07:43,049 --> 00:07:40,449 because I'm a physicist I'm not going to 192 00:07:44,999 --> 00:07:43,059 try and ask you know how did this maybe 193 00:07:47,010 --> 00:07:45,009 come about because of selective 194 00:07:48,809 --> 00:07:47,020 pressures instead I'm gonna ask maybe 195 00:07:51,570 --> 00:07:48,819 how did this come about on from 196 00:07:53,219 --> 00:07:51,580 thermodynamics and then that sort of 197 00:07:56,249 --> 00:07:53,229 changes the sort of question you can ask 198 00:07:58,439 --> 00:07:56,259 so instead I would say what I'm trying 199 00:07:59,489 --> 00:07:58,449 to understand is how can we get these 200 00:08:01,860 --> 00:07:59,499 things to self-assemble 201 00:08:04,019 --> 00:08:01,870 without much you know that means no 202 00:08:06,449 --> 00:08:04,029 intervention right tools are no enzymes 203 00:08:09,329 --> 00:08:06,459 so self-assembly not do-it-yourself 204 00:08:11,100 --> 00:08:09,339 assembly which is like you know you're 205 00:08:15,659 --> 00:08:11,110 forcing it into that structure with my 206 00:08:18,029 --> 00:08:15,669 footing so when I say no micro fluidics 207 00:08:19,320 --> 00:08:18,039 that's rather specific and I just mean 208 00:08:22,019 --> 00:08:19,330 like we don't want to go into a clean 209 00:08:23,339 --> 00:08:22,029 room because that's a lot of work but it 210 00:08:26,609 --> 00:08:23,349 doesn't mean we can't use other tools 211 00:08:28,199 --> 00:08:26,619 and so there aren't really many tools at 212 00:08:31,019 --> 00:08:28,209 our disposal in terms of you know 213 00:08:33,689 --> 00:08:31,029 prebiotic earth but we had rocks and 214 00:08:35,459 --> 00:08:33,699 early humans had rocks and this is a 215 00:08:36,779 --> 00:08:35,469 really tenuous line of reasoning but 216 00:08:39,360 --> 00:08:36,789 there was no more logic to it when I 217 00:08:42,509 --> 00:08:39,370 tried it in lab and because I had some 218 00:08:46,590 --> 00:08:42,519 rocks sitting around and I made vesicles 219 00:08:48,540 --> 00:08:46,600 as usual but I put some clay in and then 220 00:08:50,400 --> 00:08:48,550 what you see is that as soon as you add 221 00:08:52,620 --> 00:08:50,410 mineral particles the sorts of vesicles 222 00:08:54,809 --> 00:08:52,630 that you form are the sort of like high 223 00:08:56,939 --> 00:08:54,819 contrast low contrast sort of variety 224 00:08:59,400 --> 00:08:56,949 that you see on the left but you get 225 00:09:01,170 --> 00:08:59,410 these sort of giant rings forming 226 00:09:04,230 --> 00:09:01,180 instead 227 00:09:07,950 --> 00:09:04,240 and so that to me was very surprising I 228 00:09:10,440 --> 00:09:07,960 tried other sister zoomed-in and then I 229 00:09:12,180 --> 00:09:10,450 tried a different way of visualizing 230 00:09:13,920 --> 00:09:12,190 this and this is just you know you make 231 00:09:15,870 --> 00:09:13,930 some vesicles and then you add a little 232 00:09:18,090 --> 00:09:15,880 bit of fluorescent dye to the outside 233 00:09:19,650 --> 00:09:18,100 and the dye isn't able to cross the 234 00:09:21,300 --> 00:09:19,660 membrane so now we're able to see that 235 00:09:23,730 --> 00:09:21,310 in the control experiment when you just 236 00:09:26,940 --> 00:09:23,740 you know dump and fulfilling like don't 237 00:09:30,150 --> 00:09:26,950 fatty acids into buffer they make tiny 238 00:09:31,470 --> 00:09:30,160 vesicles then a lot of them are multi 239 00:09:32,610 --> 00:09:31,480 laid we can't really see that structure 240 00:09:34,860 --> 00:09:32,620 there but basically they're not 241 00:09:38,220 --> 00:09:34,870 encapsulating much of the of the liquid 242 00:09:40,620 --> 00:09:38,230 but as you add things like mineral 243 00:09:42,810 --> 00:09:40,630 particles then all of a sudden you're 244 00:09:44,460 --> 00:09:42,820 getting much much more of the volume be 245 00:09:48,030 --> 00:09:44,470 encapsulated those are the voids that 246 00:09:49,830 --> 00:09:48,040 you see actually um and so you see this 247 00:09:52,560 --> 00:09:49,840 sort of like cheese Swiss cheese like 248 00:09:54,330 --> 00:09:52,570 structure where you know this there's 249 00:09:55,740 --> 00:09:54,340 the same amount of lipid in the image 250 00:09:57,750 --> 00:09:55,750 that's on the left that's on the right 251 00:09:59,310 --> 00:09:57,760 but in the image on the left a lot of 252 00:10:01,140 --> 00:09:59,320 the lipid is wasted in making onion 253 00:10:02,850 --> 00:10:01,150 structures whereas on the right all of 254 00:10:04,950 --> 00:10:02,860 the lipid is being used to make single 255 00:10:07,650 --> 00:10:04,960 layered structures and so you take up a 256 00:10:09,390 --> 00:10:07,660 lot more space and so this is kind of 257 00:10:11,010 --> 00:10:09,400 weird like there's no reason this should 258 00:10:14,970 --> 00:10:11,020 have worked really there was no logic 259 00:10:16,800 --> 00:10:14,980 behind me trying it but then I think 260 00:10:18,690 --> 00:10:16,810 there might actually varies and that is 261 00:10:20,550 --> 00:10:18,700 that all of these are mineral particles 262 00:10:22,380 --> 00:10:20,560 sitting around in the organic chemistry 263 00:10:25,140 --> 00:10:22,390 lab are there for a reason they used for 264 00:10:27,450 --> 00:10:25,150 ion exchange or whatever basically 265 00:10:30,780 --> 00:10:27,460 cations can like bind to the surfaces of 266 00:10:33,960 --> 00:10:30,790 things like one Laurel and oak clay of 267 00:10:35,670 --> 00:10:33,970 silicates and they're usually used to 268 00:10:38,490 --> 00:10:35,680 sort of switch out what cation you're 269 00:10:40,050 --> 00:10:38,500 however whatever but maybe what's 270 00:10:41,820 --> 00:10:40,060 happening is by adding these mineral 271 00:10:44,130 --> 00:10:41,830 particles the cut ions are sticking to 272 00:10:46,320 --> 00:10:44,140 the cat clay instead of two mo vesicles 273 00:10:48,540 --> 00:10:46,330 and that's allowing the negative charges 274 00:10:49,020 --> 00:10:48,550 that are on the surface actually repel 275 00:10:51,540 --> 00:10:49,030 each other 276 00:10:54,620 --> 00:10:51,550 and so that's sort of just sort of 277 00:10:56,640 --> 00:10:54,630 putting the unis lamellar structure in 278 00:11:00,330 --> 00:10:56,650 but this peak it makes them more 279 00:11:03,210 --> 00:11:00,340 favourable ok so then this is the simple 280 00:11:06,270 --> 00:11:03,220 experiment this is just your vesicles 281 00:11:08,490 --> 00:11:06,280 with the usual buffer concentration 200 282 00:11:10,380 --> 00:11:08,500 milli molar almost everyone who works on 283 00:11:13,230 --> 00:11:10,390 fatty acid vesicles chooses to use this 284 00:11:14,850 --> 00:11:13,240 concentration it's kind of inherited but 285 00:11:18,300 --> 00:11:14,860 if you just 286 00:11:21,180 --> 00:11:18,310 even reduce the salt concentration by 25 287 00:11:22,530 --> 00:11:21,190 milli molar and I know this here is a 288 00:11:24,210 --> 00:11:22,540 different number but even if you reduce 289 00:11:25,890 --> 00:11:24,220 the salt concentration by a little bit 290 00:11:28,350 --> 00:11:25,900 then you start getting these really big 291 00:11:32,520 --> 00:11:28,360 vesicles with well separated membranes 292 00:11:33,690 --> 00:11:32,530 and you can encapsulate dye inside they 293 00:11:35,460 --> 00:11:33,700 don't leak a lot just having one 294 00:11:38,190 --> 00:11:35,470 membrane um doesn't compromise their 295 00:11:39,930 --> 00:11:38,200 sort of integrity okay so I've been 296 00:11:41,730 --> 00:11:39,940 claiming that these structures the Uni 297 00:11:44,760 --> 00:11:41,740 lamella for the last however many 298 00:11:47,160 --> 00:11:44,770 minutes so the final step is just to 299 00:11:49,230 --> 00:11:47,170 show you that they actually are and then 300 00:11:50,940 --> 00:11:49,240 because making uni lamellar vesicles is 301 00:11:52,680 --> 00:11:50,950 kind of a big deal in synthetic biology 302 00:11:54,960 --> 00:11:52,690 there's quite a well-developed technique 303 00:11:58,110 --> 00:11:54,970 that people use they throw some dye in 304 00:12:00,360 --> 00:11:58,120 the dyes like lipophilic and it goes 305 00:12:01,800 --> 00:12:00,370 into the membrane and the more membranes 306 00:12:04,950 --> 00:12:01,810 you have the brighter they look under 307 00:12:06,270 --> 00:12:04,960 fluorescent microscope and so on the 308 00:12:09,060 --> 00:12:06,280 sample on the right here is made with 309 00:12:10,650 --> 00:12:09,070 the high salt buffer conditions and you 310 00:12:12,510 --> 00:12:10,660 can see that in this one field of view 311 00:12:13,740 --> 00:12:12,520 there are multiple vesicles but there 312 00:12:16,500 --> 00:12:13,750 are different brightnesses and it's 313 00:12:19,020 --> 00:12:16,510 actually quite pretty and then if you 314 00:12:22,320 --> 00:12:19,030 make a low salt concentration sample 315 00:12:25,470 --> 00:12:22,330 then they all look kind of the same like 316 00:12:27,960 --> 00:12:25,480 intensity so we can write some code to 317 00:12:29,520 --> 00:12:27,970 kind of not just eyeball this but our 318 00:12:31,590 --> 00:12:29,530 quantified the average intensity of 319 00:12:32,880 --> 00:12:31,600 these rings and you can see for the low 320 00:12:35,190 --> 00:12:32,890 salt sample on the left you get this 321 00:12:37,500 --> 00:12:35,200 sort of single peak distribution and it 322 00:12:39,510 --> 00:12:37,510 lines up with like the the sort of demo 323 00:12:41,460 --> 00:12:39,520 strings that we find in the sort of 324 00:12:43,980 --> 00:12:41,470 sample on the right that's a bit Messier 325 00:12:45,810 --> 00:12:43,990 and so this is kind of pretty good 326 00:12:47,660 --> 00:12:45,820 evidence that we've found a way to make 327 00:12:50,280 --> 00:12:47,670 these sort of greeny lamellar structures 328 00:12:51,750 --> 00:12:50,290 literally without doing anything you mix 329 00:12:54,660 --> 00:12:51,760 it together you go to sleep you come 330 00:12:56,490 --> 00:12:54,670 back and you get the sample of that and 331 00:12:57,930 --> 00:12:56,500 this is sort of going towards the goal 332 00:13:00,240 --> 00:12:57,940 of making these membranous structures 333 00:13:04,860 --> 00:13:00,250 that resemble more sort of the life as 334 00:13:06,420 --> 00:13:04,870 we know it like Easter and I think the 335 00:13:08,280 --> 00:13:06,430 reason we're able to do this with fatty 336 00:13:09,600 --> 00:13:08,290 acids and you know most people in 337 00:13:11,760 --> 00:13:09,610 synthetic biology work with 338 00:13:13,560 --> 00:13:11,770 phospholipids it's because fatty acids 339 00:13:15,450 --> 00:13:13,570 are you know have some special property 340 00:13:17,160 --> 00:13:15,460 the first thing is that they do carry 341 00:13:18,690 --> 00:13:17,170 negative charges half of the molecules 342 00:13:20,610 --> 00:13:18,700 are negatively charged when you can make 343 00:13:22,560 --> 00:13:20,620 vesicle and that really helps the 344 00:13:24,900 --> 00:13:22,570 membranes repel each other and like have 345 00:13:26,910 --> 00:13:24,910 that separation and the second reason is 346 00:13:28,710 --> 00:13:26,920 that these molecules are small so they 347 00:13:30,749 --> 00:13:28,720 actually moved between vesicles whereas 348 00:13:32,939 --> 00:13:30,759 if you make a phospholipid vesicle the 349 00:13:35,040 --> 00:13:32,949 phospholipid R is actually kinetically 350 00:13:36,569 --> 00:13:35,050 trapped in its vesicle that it happens 351 00:13:38,129 --> 00:13:36,579 to be in they can't move to a 352 00:13:39,990 --> 00:13:38,139 neighboring one and so if you have a 353 00:13:44,509 --> 00:13:40,000 complex energy landscape you can't sort 354 00:13:47,129 --> 00:13:44,519 of remove anywhere yeah so basically 355 00:13:49,350 --> 00:13:47,139 these are simple amphiphilic molecules 356 00:13:51,569 --> 00:13:49,360 that may have been around on earlier 357 00:13:54,420 --> 00:13:51,579 that can form membranes they have their 358 00:13:55,769 --> 00:13:54,430 advantages and it can help us fight form 359 00:13:59,040 --> 00:13:55,779 these structures that we couldn't with 360 00:14:01,860 --> 00:13:59,050 phospholipids also that you know having 361 00:14:03,600 --> 00:14:01,870 low ionic strength buffers seems to help 362 00:14:04,499 --> 00:14:03,610 us form giant any lamellar vesicles 363 00:14:07,350 --> 00:14:04,509 which is cool 364 00:14:09,179 --> 00:14:07,360 and if you can't afford to use lower 365 00:14:10,559 --> 00:14:09,189 ionic strength buffers it seems like 366 00:14:12,389 --> 00:14:10,569 that you can just chuck some mineral 367 00:14:15,030 --> 00:14:12,399 particles in and that'll do the job okay 368 00:14:17,100 --> 00:14:15,040 so I'd like to thank everyone here for 369 00:14:19,019 --> 00:14:17,110 organizing this it's this space where 370 00:14:22,499 --> 00:14:19,029 you know we can all learn a lot with low 371 00:14:24,749 --> 00:14:22,509 pressure and I don't know this is being 372 00:14:28,410 --> 00:14:24,759 recorded hey nurse we're all very happy 373 00:14:29,429 --> 00:14:28,420 we're all very happy and I can all be 374 00:14:32,490 --> 00:14:29,439 very happy together 375 00:14:35,040 --> 00:14:32,500 no it's really fun um and and I'd like 376 00:14:38,610 --> 00:14:35,050 to thank my lab jack dining out loud 377 00:14:40,710 --> 00:14:38,620 manage is amazing and also to Chris Carr 378 00:14:42,240 --> 00:14:40,720 and Kendall sobota for the olivine that 379 00:14:44,819 --> 00:14:42,250 I used I was actually collected from the 380 00:14:54,240 --> 00:14:44,829 green sand beach in Hawaii pretty much 381 00:15:02,129 --> 00:14:54,250 thank you thank you Anna do you have any 382 00:15:05,369 --> 00:15:02,139 questions okay very fascinating work I 383 00:15:09,389 --> 00:15:05,379 would be curious if is any temperature 384 00:15:12,480 --> 00:15:09,399 dependence the phenomena that you of 385 00:15:15,569 --> 00:15:12,490 Europe inter experiment also the other 386 00:15:20,040 --> 00:15:15,579 thing for pantry application and I think 387 00:15:21,720 --> 00:15:20,050 that oleic acid is bonding 388 00:15:23,850 --> 00:15:21,730 I don't remember what would be the bond 389 00:15:27,090 --> 00:15:23,860 isn't the boric acid we met right but 390 00:15:30,259 --> 00:15:27,100 all we have we try some shorter fatty 391 00:15:35,220 --> 00:15:30,269 acids like the canary acid we do see 392 00:15:36,420 --> 00:15:35,230 some kinds of cell dumplings yeah I'll 393 00:15:38,009 --> 00:15:36,430 answer the second question 394 00:15:41,790 --> 00:15:38,019 that's cuz I already forgot the first 395 00:15:42,310 --> 00:15:41,800 one but yeah I did use our like asset 396 00:15:44,889 --> 00:15:42,320 every 397 00:15:46,509 --> 00:15:44,899 and it's probable its abundance is 398 00:15:48,850 --> 00:15:46,519 probably close to nothing on meteorites 399 00:15:50,079 --> 00:15:48,860 right so this is just like a cheap thing 400 00:15:52,990 --> 00:15:50,089 that's easy to work with room 401 00:15:55,389 --> 00:15:53,000 temperature in live I've tried sure to 402 00:15:57,280 --> 00:15:55,399 ensure their chance and so my sort of 403 00:16:00,819 --> 00:15:57,290 behavior where I see these giant uni 404 00:16:02,559 --> 00:16:00,829 lamella vesicles form the pH range at 405 00:16:05,139 --> 00:16:02,569 which it happens will change with the 406 00:16:08,170 --> 00:16:05,149 with the fatty acid chain length so for 407 00:16:11,970 --> 00:16:08,180 fourteen carbons I see them form at a 408 00:16:15,069 --> 00:16:11,980 lower pH the problem is when you have 409 00:16:18,519 --> 00:16:15,079 these giant vesicles that are about five 410 00:16:20,769 --> 00:16:18,529 micrometers in diameter so I'll 411 00:16:23,530 --> 00:16:20,779 backtrack a bit if you pack oranges into 412 00:16:25,449 --> 00:16:23,540 a box the maximum packing fraction you 413 00:16:27,850 --> 00:16:25,459 can get is like 60 something said I 414 00:16:30,220 --> 00:16:27,860 think and so if you calculate the amount 415 00:16:33,280 --> 00:16:30,230 of material of lipid that you need to 416 00:16:35,949 --> 00:16:33,290 fill a box like fill your sample it is 417 00:16:38,079 --> 00:16:35,959 actually only 5 mili molar and so that's 418 00:16:40,210 --> 00:16:38,089 below the critical aggregation 419 00:16:42,040 --> 00:16:40,220 concentration for these shorter chain 420 00:16:44,740 --> 00:16:42,050 fatty acids which is why I didn't use 421 00:16:47,199 --> 00:16:44,750 them if you do sort of use more lipid 422 00:16:49,059 --> 00:16:47,209 and instead of them just all forming big 423 00:16:51,370 --> 00:16:49,069 vesicles and getting stuck they start 424 00:16:54,460 --> 00:16:51,380 forming like vesicles inside vesicles 425 00:16:56,650 --> 00:16:54,470 and so I mean that's a cool behavior in 426 00:16:58,689 --> 00:16:56,660 and of itself but um yeah I think it'd 427 00:17:01,809 --> 00:16:58,699 be nice to go to a like shorter chain 428 00:17:04,140 --> 00:17:01,819 system like c10 and then just see if we 429 00:17:12,819 --> 00:17:04,150 can make the well separated membranes 430 00:17:12,829 --> 00:17:22,830 one 431 00:17:28,030 --> 00:17:25,120 all right let's talk I have you have 432 00:17:31,540 --> 00:17:28,040 tried unbuffered system like bison is 433 00:17:33,400 --> 00:17:31,550 not very biotic and the pika what it 434 00:17:35,050 --> 00:17:33,410 seems to happen that the giant vesicles 435 00:17:37,330 --> 00:17:35,060 are formed around the pKa of the fatty 436 00:17:40,030 --> 00:17:37,340 acid so if you use the fact that it does 437 00:17:42,040 --> 00:17:40,040 a buffer have you tried this system no I 438 00:17:44,980 --> 00:17:42,050 haven't the thing that I tried that was 439 00:17:46,030 --> 00:17:44,990 the most sort of the simplest system I 440 00:17:48,130 --> 00:17:46,040 tried was no buffer 441 00:17:49,870 --> 00:17:48,140 I'm just hard to chloric acid and sodium 442 00:17:51,790 --> 00:17:49,880 chloride and the same thing happens it 443 00:17:54,520 --> 00:17:51,800 just it's just annoying to like titrate 444 00:18:00,010 --> 00:17:54,530 so I just stop do you think I used 445 00:18:02,680 --> 00:18:00,020 buffer instead yeah thanks for the great 446 00:18:04,630 --> 00:18:02,690 talk I was just wondering if there was 447 00:18:08,440 --> 00:18:04,640 any significant difference in stability 448 00:18:12,270 --> 00:18:08,450 of the vesicles between the different 449 00:18:15,250 --> 00:18:12,280 concentrations or the addition of notes 450 00:18:17,980 --> 00:18:15,260 yeah so I didn't actually check on their 451 00:18:19,630 --> 00:18:17,990 permeabilities too like all again weakly 452 00:18:25,930 --> 00:18:19,640 tides off anything 453 00:18:28,480 --> 00:18:25,940 oh you mean oh they're very stable like 454 00:18:31,180 --> 00:18:28,490 they sit around for like a month and I'm 455 00:18:32,860 --> 00:18:31,190 pretty sure the fatty acid I use like as 456 00:18:35,400 --> 00:18:32,870 oxidized and they still look the same 457 00:18:40,620 --> 00:18:35,410 under the microscope I don't know why 458 00:18:44,200 --> 00:18:40,630 yeah okay one more 459 00:18:46,120 --> 00:18:44,210 I'll go everyone else great talk so 460 00:18:48,880 --> 00:18:46,130 early on you showed where you guys put 461 00:18:51,220 --> 00:18:48,890 RNA inside one of these double membrane 462 00:18:53,280 --> 00:18:51,230 and things could you do the same well 463 00:18:56,320 --> 00:18:53,290 first of all it was there any kind of 464 00:18:57,400 --> 00:18:56,330 activity with that or purpose or is it 465 00:18:58,720 --> 00:18:57,410 just kind of show that you could put him 466 00:19:02,770 --> 00:18:58,730 in there and then could you also do the 467 00:19:04,960 --> 00:19:02,780 same with the GU v's yeah so I've tried 468 00:19:07,120 --> 00:19:04,970 encapsulation experiments with these TVs 469 00:19:11,770 --> 00:19:07,130 on with the the low salt concentration 470 00:19:14,290 --> 00:19:11,780 everything and if I the largest thing 471 00:19:16,510 --> 00:19:14,300 I've stuffed inside a 400 nanometer 472 00:19:17,800 --> 00:19:16,520 large polystyrene particle and so 473 00:19:19,660 --> 00:19:17,810 there's no problem getting nano 474 00:19:21,300 --> 00:19:19,670 particles inside or like colloidal 475 00:19:24,310 --> 00:19:21,310 particles inside as long as they're 476 00:19:25,780 --> 00:19:24,320 diffusing they'll go in so there's like 477 00:19:27,280 --> 00:19:25,790 huge defects when these things are 478 00:19:28,870 --> 00:19:27,290 forming right so I don't really know 479 00:19:31,060 --> 00:19:28,880 what the encapsulation mechanism is but 480 00:19:32,620 --> 00:19:31,070 you can stuff RNA inside what people 481 00:19:34,840 --> 00:19:32,630 normally do in love when they put RNA 482 00:19:36,160 --> 00:19:34,850 inside is do primary extension 483 00:19:38,050 --> 00:19:36,170 experiment so they're trying to see can 484 00:19:40,570 --> 00:19:38,060 we elongate a primer non enzymatically 485 00:19:43,090 --> 00:19:40,580 and then they'll usually crack these 486 00:19:45,600 --> 00:19:43,100 vesicle vesicles open and then run the 487 00:19:49,420 --> 00:19:45,610 results in a gel to see if it worked 488 00:19:51,970 --> 00:19:49,430 yeah so I think as we move towards 489 00:19:54,810 --> 00:19:51,980 developing like optical Reed sort of 490 00:19:57,460 --> 00:19:54,820 feedback for successful primer extension 491 00:19:59,020 --> 00:19:57,470 the G V's will be more useful for that 492 00:20:00,490 --> 00:19:59,030 purpose because then we can like look at 493 00:20:03,880 --> 00:20:00,500 something big under a microscope right 494 00:20:06,340 --> 00:20:03,890 off that'll be pretty cool okay thank